Kevin N. Dalby: search on Z-Library

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1

Tinker-OpenMM: Absolute and relative alchemical free energies using AMOEBA on GPUs

Harger, Matthew, Li, Daniel, Wang, Zhi, Dalby, Kevin, Lagardère, Louis, Piquemal, Jean-Philip, Ponder, Jay, Ren, Pengyu

Journal:

Journal of Computational Chemistry

Year:

2017

Language:

english

File:

PDF, 635 KB

english, 2017

2

Corrigendum to “Purification and characterization of tagless recombinant human elongation factor 2 kinase (eEF-2K) expressed in Escherichia coli” [Protein Expression and Purification 79 (2011) 237–244]

Abramczyk, Olga, Tavares, Clint D.J., Devkota, Ashwini K., Ryazanov, Alexey G., Turk, Benjamin E., Riggs, Austen F., Ozpolat, Bulent, Dalby, Kevin N.

Journal:

Protein Expression and Purification

Year:

2012

Language:

english

File:

PDF, 125 KB

english, 2012

3

Identification and Validation of Novel PERK Inhibitors

Wang, Qiantao, Park, Jihyun, Devkota, Ashwini K., Cho, Eun Jeong, Dalby, Kevin N., Ren, Pengyu

Journal:

Journal of Chemical Information and Modeling

Year:

2014

Language:

english

File:

PDF, 5.66 MB

english, 2014

4

Design, synthesis and biological evaluation of fused naphthofuro[3,2-c] quinoline-6,7,12-triones and pyrano[3,2-c]quinoline-6,7,8,13-tetraones derivatives as ERK inhibitors with efficacy in BRAF-mutant melanoma

Aly, Ashraf A., El-Sheref, Essmat M., Bakheet, Momtaz E.M., Mourad, Mai A.E., Bräse, Stefan, Ibrahim, Mahmoud A.A., Nieger, Martin, Garvalov, Boyan K., Dalby, Kevin N., Kaoud, Tamer S.

Journal:

Bioorganic Chemistry

Year:

2019

Language:

english

File:

PDF, 4.39 MB

english, 2019

5

Properties and Regulation of a Transiently Assembled ERK2·Ets-1 Signaling Complex †

Callaway, Kari A., Rainey, Mark A., Riggs, Austen F., Abramczyk, Olga, Dalby, Kevin N.

Journal:

Year:

2006

Language:

english

File:

PDF, 713 KB

english, 2006

6

Targeted Silencing of Elongation Factor 2 Kinase Suppresses Growth and Sensitizes Tumors to Doxorubicin in an Orthotopic Model of Breast Cancer

Tekedereli, Ibrahim, Alpay, S. Neslihan, Tavares, Clint D. J., Cobanoglu, Zehra E., Kaoud, Tamer S., Sahin, Ibrahim, Sood, Anil K., Lopez-Berestein, Gabriel, Dalby, Kevin N., Ozpolat, Bulent, Ahmad, A

Journal:

Year:

2012

Language:

english

File:

PDF, 1.30 MB

english, 2012

7

Virtual screening using molecular simulations

Tianyi Yang, Johnny C. Wu, Chunli Yan, Yuanfeng Wang, Ray Luo, Michael B. Gonzales, Kevin N. Dalby, Pengyu Ren

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 521 KB

english, 2011

8

A Fluorescence-Based Assay for p38α Recruitment Site Binders: Identification of Rooperol as a Novel p38α Kinase Inhibitor

Li, Jing, Kaoud, Tamer S., LeVieux, Jake, Gilbreath, Brad, Moharana, Swapna, Dalby, Kevin N., Kerwin, Sean M.

Journal:

Year:

2013

Language:

english

File:

PDF, 950 KB

english, 2013

9

General acid catalysis of the reversible addition of thiolate anions to cyanamide

Dalby, Kevin N., Jencks, William P.

Journal:

Journal of the Chemical Society Perkin Transactions 2

Year:

1997

Language:

english

File:

PDF, 129 KB

english, 1997

10

Models for nuclease catalysis: mechanisms for general acid catalysis of the rapid intramolecular displacement of methoxide from a phosphate diester

Dalby, Kevin N., Kirby, Anthony J., Hollfelder, Florian

Journal:

Journal of the Chemical Society Perkin Transactions 2

Year:

1993

Language:

english

File:

PDF, 1.80 MB

english, 1993

11

Reaction Mechanisms. Part 2. Polar Reactions

Journal:

Year:

2005

File:

PDF, 8 KB

2005

12

Conserved Elements of the Cytochrome P-450 Superfamily Found in Monoamine Oxidase B

Duane A Lewis, Kevin N Dalby, Creed W Abell

Journal:

NeuroToxicology

Year:

2004

Language:

english

File:

PDF, 156 KB

english, 2004

13

Elucidating binding modes of zuonin A enantiomers to JNK1 via in silico methods

Dykstra, Daniel W., Dalby, Kevin N., Ren, Pengyu

Journal:

Journal of Molecular Graphics and Modelling

Year:

2013

Language:

english

File:

PDF, 1.31 MB

english, 2013

14

The Anti-Apoptotic Protein PEA-15 Is a Tight Binding Inhibitor of ERK1 and ERK2, Which Blocks Docking Interactions at the D-Recruitment Site †

Callaway, Kari, Abramczyk, Olga, Martin, Lance, Dalby, Kevin N.

Journal:

Year:

2007

Language:

english

File:

PDF, 540 KB

english, 2007

15

Asymmetric Synthesis of Letermovir Using a Novel Phase-Transfer-Catalyzed Aza-Michael Reaction

Humphrey, Guy R., Dalby, Stephen M., Andreani, Teresa, Xiang, Bangping, Luzung, Michael R., Song, Zhiguo Jake, Shevlin, Michael, Christensen, Melodie, Belyk, Kevin M., Tschaen, David M.

Journal:

Organic Process Research & Development

Year:

2016

Language:

english

File:

PDF, 1.06 MB

english, 2016

16

Elucidating the Phosphate Binding Mode of Phosphate-Binding Protein: The Critical Effect of Buffer Solution

Qi, Rui, Jing, Zhifeng, Liu, Chengwen, Piquemal, Jean-Philip, Dalby, Kevin N., Ren, Pengyu

Journal:

Journal of Physical Chemistry B

Year:

2018

Language:

english

File:

PDF, 594 KB

english, 2018

17

Where to go goose hunting? Using pattern-oriented modeling to better understand human decision processes

Williams, James Henty, Topping, Chris J., Dalby, Lars, Clausen, Kevin K., Madsen, Jesper

Journal:

Human Dimensions of Wildlife

Year:

2018

Language:

english

File:

PDF, 1.89 MB

english, 2018

18

NO-releasing STAT3 inhibitors suppress BRAF-mutant melanoma growth

Kaoud, Tamer S., Mohassab, Aliaa M., Hassan, Heba A., Yan, Chunli, Van Ravenstein, Sabrina X., Abdelhamid, Dalia, Dalby, Kevin N., Abdel-Aziz, Mohamed

Journal:

European Journal of Medicinal Chemistry

Year:

2019

Language:

english

File:

PDF, 5.23 MB

english, 2019

19

193 nm Ultraviolet Photodissociation Mass Spectrometry for Phosphopeptide Characterization in the Positive and Negative Ion Modes

Robinson, Michelle R., Taliaferro, Juliana M., Dalby, Kevin N., Brodbelt, Jennifer S.

Journal:

Journal of Proteome Research

Year:

2016

Language:

english

File:

PDF, 1.33 MB

english, 2016

20

Discovery of a potent inhibitor of MELK that inhibits expression of the anti-apoptotic protein Mcl-1 and TNBC cell growth

Edupuganti, Ramakrishna, Taliaferro, Juliana M., Wang, Qiantao, Xie, Xuemei, Cho, Eun Jeong, Vidhu, Fnu, Ren, Pengyu, Anslyn, Eric V., Bartholomeusz, Chandra, Dalby, Kevin N.

Journal:

Bioorganic & Medicinal Chemistry

Year:

2017

Language:

english

File:

PDF, 788 KB

english, 2017

21

A Fluorescence-Based High-Throughput Assay for the Identification of Anticancer Reagents Targeting Fructose-1,6-Bisphosphate Aldolase

Cho, Eun Jeong, Devkota, Ashwini K., Stancu, Gabriel, Edupunganti, Ramakrishna, Powis, Garth, Dalby, Kevin N.

Journal:

Year:

2017

Language:

english

File:

PDF, 862 KB

english, 2017

22

Investigating the Kinetic Mechanism of Inhibition of Elongation Factor 2 Kinase by NH125: Evidence of a Common in Vitro Artifact

Devkota, Ashwini K., Tavares, Clint D. J., Warthaka, Mangalika, Abramczyk, Olga, Marshall, Kyle D., Kaoud, Tamer S., Gorgulu, Kivanc, Ozpolat, Bulent, Dalby, Kevin N.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.52 MB

english, 2012

23

Sexual function and satisfaction among heterosexual and sexual minority U.S. adults: A cross-sectional survey

Flynn, Kathryn E., Lin, Li, Weinfurt, Kevin P., Dalby, Andrew R.

Journal:

Year:

2017

Language:

english

File:

PDF, 601 KB

english, 2017

24

Coronary stent implantation and adverse cardiac events after surgery

Thim, Troels, Egholm, Gro, Olesen, Kevin Kris Warnakula, Madsen, Morten, Jensen, Svend Eggert, Jensen, Lisette Okkels, Bøtker, Hans Erik, Kristensen, Steen Dalby, Maeng, Michael

Journal:

European Journal of Clinical Investigation

Year:

2018

Language:

english

File:

PDF, 480 KB

english, 2018

25

Targeting ERK beyond the boundaries of the kinase active site in melanoma

Sammons, Rachel M., Ghose, Ranajeet, Tsai, Kenneth Y., Dalby, Kevin N.

Journal:

Molecular Carcinogenesis

Year:

2019

Language:

english

File:

PDF, 4.98 MB

english, 2019

26

Ten-Year Outcomes of Sirolimus-Eluting versus Zotarolimus-Eluting Coronary Stents in Patients With versus Without Diabetes Mellitus (SORT OUT III)

Olesen, Kevin K.W., Pareek, Manan, Madsen, Morten, Jensen, Lisette O., Christiansen, Evald H., Thuesen, Leif, Lassen, Jens F., Kristensen, Steen Dalby, Bøtker, Hans Erik, Maeng, Michael

Journal:

The American Journal of Cardiology

Year:

2019

Language:

english

File:

PDF, 684 KB

english, 2019

27

Purification and characterization of tagless recombinant human elongation factor 2 kinase (eEF-2K) expressed in Escherichia coli

Olga Abramczyk, Clint D.J. Tavares, Ashwini K. Devkota, Alexey G. Ryazanov, Benjamin E. Turk, Austen F. Riggs, Bulent Ozpolat, Kevin N. Dalby

Journal:

Protein Expression and Purification

Year:

2011

Language:

english

File:

PDF, 583 KB

english, 2011

28

Signal Integration at Elongation Factor 2 Kinase

Tavares, Clint D. J., Giles, David H., Stancu, Gabriel, Chitjian, Catrina A., Ferguson, Scarlett B., Wellmann, Rebecca M., Kaoud, Tamer S., Ghose, Ranajeet, Dalby, Kevin N.

Journal:

Journal of Biological Chemistry

Year:

2017

Language:

english

File:

PDF, 1.28 MB

english, 2017

29

Structural and Dynamic Features of F-recruitment Site Driven Substrate Phosphorylation by ERK2

Piserchio, Andrea, Ramakrishan, Venkatesh, Wang, Hsin, Kaoud, Tamer S., Arshava, Boris, Dutta, Kaushik, Dalby, Kevin N., Ghose, Ranajeet

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 1.73 MB

english, 2015

30

Developing Colorimetric and Luminescence-Based High-Throughput Screening Platforms for Monitoring the GTPase Activity of Ferrous Iron Transport Protein B (FeoB)

Veloria, John, Shin, Minhye, Devkota, Ashwini K., Payne, Shelley M., Cho, Eun Jeong, Dalby, Kevin N.

Journal:

Year:

2019

File:

PDF, 809 KB

2019

31

Expanding the Repertoire of an ERK2 Recruitment Site: Cysteine Footprinting Identifies the D-Recruitment Site as a Mediator of Ets-1 Binding †

Abramczyk, Olga, Rainey, Mark A., Barnes, Richard, Martin, Lance, Dalby, Kevin N.

Journal:

Year:

2007

Language:

english

File:

PDF, 927 KB

english, 2007

32

Current and Potential Threats to Nordic Duck Populations — A Horizon Scanning Exercise

Fox, Anthony D., Jónsson, Jón Einar, Aarvak, Tomas, Bregnballe, Thomas, Christensen, Thomas Kjær, Clausen, Kevin Kuhlmann, Clausen, Preben, Dalby, Lars, Holm, Thomas Eske, Pavón-Jordan, Diego, Laursen

Journal:

Annales Zoologici Fennici

Year:

2015

Language:

english

File:

PDF, 416 KB

english, 2015

33

Using docking and alchemical free energy approach to determine the binding mechanism of eEF2K inhibitors and prioritizing the compound synthesis

Wang, Qiantao, Edupuganti, Ramakrishna, Tavares, Clint D. J., Dalby, Kevin N., Ren, Pengyu

Journal:

Frontiers in Molecular Biosciences

Year:

2015

Language:

english

File:

PDF, 1.04 MB

english, 2015

34

Kinetic mechanism for p38 MAP kinase α : A partial rapid-equilibrium random-order ternary-complex mechanism for the phosphorylation of a protein substrate

Anna E. Szafranska, Kevin N. Dalby

Journal:

Year:

2005

Language:

english

File:

PDF, 407 KB

english, 2005

35

Purification of a Model Substrate for Transcription Factor Phosphorylation by ERK2

William F. Waas, Kevin N. Dalby

Journal:

Protein Expression and Purification

Year:

2001

Language:

english

File:

PDF, 163 KB

english, 2001

36

12��Reaction mechanisms : Part (ii) Polar reactions

Dalby, Kevin N.

Journal:

Annual Reports Section "B" (Organic Chemistry)

Year:

2004

Language:

english

File:

PDF, 473 KB

english, 2004

37

6??????Reaction mechanisms

Dalby, Kevin N.

Journal:

Annual Reports Section "B" (Organic Chemistry)

Year:

2002

Language:

english

File:

PDF, 478 KB

english, 2002

38

Risk Associated With Surgery Within 12 Months After Coronary Drug-Eluting Stent Implantation

Egholm, Gro, Kristensen, Steen Dalby, Thim, Troels, Olesen, Kevin K.W., Madsen, Morten, Jensen, Svend E., Jensen, Lisette O., Sørensen, Henrik T., Bøtker, Hans E., Maeng, Michael

Journal:

Journal of the American College of Cardiology

Year:

2016

Language:

english

File:

PDF, 873 KB

english, 2016

39

Staged re-evaluation of non-culprit lesions in ST segment elevation myocardial infarction: a retrospective study

Thim, Troels, Egholm, Gro, Olesen, Kevin Kris Warnakula, Kaltoft, Anne, Terkelsen, Christian Juhl, Krusell, Lars Romer, Kristensen, Steen Dalby, Bøtker, Hans Erik, Christiansen, Evald Høj, Maeng, Mich

Journal:

Year:

2016

Language:

english

File:

PDF, 727 KB

english, 2016

40

External Quality Assurance for Laboratory Identification and Capsular Typing of Streptococcus pneumoniae

Slotved, Hans-Christian, Sheppard, Carmen L., Dalby, Tine, van der Ende, Arie, Fry, Norman K., Morfeldt, Eva, Nyholm, Outi, Rokney, Assaf, Ron, Merav, Siira, Lotta, Scott, Kevin J., Smith, Andrew, Tho

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.18 MB

english, 2017

41

Structural Dynamics of the Activation of Elongation Factor 2 Kinase by Ca 2+ -Calmodulin

Will, Nathan, Lee, Kwangwoon, Hajredini, Fatlum, Giles, David H., Abzalimov, Rinat R., Clarkson, Michael, Dalby, Kevin N., Ghose, Ranajeet

Journal:

Journal of Molecular Biology

Year:

2018

Language:

english

File:

PDF, 12.79 MB

english, 2018

42

Arrestin-3 scaffolding of the JNK3 cascade suggests a mechanism for signal amplification

Perry, Nicole A., Kaoud, Tamer S., Ortega, Oscar O., Kaya, Ali I., Marcus, David J., Pleinis, John M., Berndt, Sandra, Chen, Qiuyan, Zhan, Xuanzhi, Dalby, Kevin N., Lopez, Carlos F., Iverson, T. M., G

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 1.16 MB

english, 2018

43

Structural Evaluation of Protein/Metal Complexes via Native Electrospray Ultraviolet Photodissociation Mass Spectrometry

Crittenden, Christopher M., Novelli, Elisa T., Mehaffey, M. Rachel, Xu, Gulan N., Giles, David H., Fies, Whitney A., Dalby, Kevin N., Webb, Lauren J., Brodbelt, Jennifer S.

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2020

File:

PDF, 2.88 MB

2020

44

Manipulating JNK Signaling with (−)-Zuonin A

Kaoud, Tamer S., Park, Heekwang, Mitra, Shreya, Yan, Chunli, Tseng, Chun-Chia, Shi, Yue, Jose, Jiney, Taliaferro, Juliana M., Lee, Kiyoun, Ren, Pengyu, Hong, Jiyong, Dalby, Kevin N.

Journal:

ACS Chemical Biology

Year:

2012

Language:

english

File:

PDF, 1.66 MB

english, 2012

45

Understanding the Specificity of a Docking Interaction between JNK1 and the Scaffolding Protein JIP1

Yan, Chunli, Kaoud, Tamer, Lee, Sunbae, Dalby, Kevin N., Ren, Pengyu

Journal:

Journal of Physical Chemistry B

Year:

2011

Language:

english

File:

PDF, 5.54 MB

english, 2011

46

Nonvisual Arrestins Function as Simple Scaffolds Assembling the MKK4–JNK3α2 Signaling Complex

Zhan, Xuanzhi, Kaoud, Tamer S., Dalby, Kevin N., Gurevich, Vsevolod V.

Journal:

Year:

2011

Language:

english

File:

PDF, 2.38 MB

english, 2011

47

Overexpression of GRK6 rescues l-DOPA-induced signaling abnormalities in the dopamine-depleted striatum of hemiparkinsonian rats

Ahmed, M. Rafiuddin, Bychkov, Evgeny, Kook, Seunghyi, Zurkovsky, Lilia, Dalby, Kevin N., Gurevich, Eugenia V.

Journal:

Experimental Neurology

Year:

2015

Language:

english

File:

PDF, 1.93 MB

english, 2015

48

A scalable lysyl hydroxylase 2 expression system and luciferase-based enzymatic activity assay

Guo, Hou-Fu, Cho, Eun Jeong, Devkota, Ashwini K., Chen, Yulong, Russell, William, Phillips, George N., Yamauchi, Mitsuo, Dalby, Kevin N., Kurie, Jonathan M.

Journal:

Archives of Biochemistry and Biophysics

Year:

2017

Language:

english

File:

PDF, 1.02 MB

english, 2017

49

Erratum: Erratum: Structural and Dynamic Features of F-recruitment Site Driven Substrate Phosphorylation by ERK2

Piserchio, Andrea, Ramakrishan, Venkatesh, Wang, Hsin, Kaoud, Tamer S., Arshava, Boris, Dutta, Kaushik, Dalby, Kevin N., Ghose, Ranajeet

Journal:

Scientific Reports

Year:

2015

File:

PDF, 98 KB

2015

50

MELK: a potential novel therapeutic target for TNBC and other aggressive malignancies

Pitner, Mary Kathryn, Taliaferro, Juliana M., Dalby, Kevin N., Bartholomeusz, Chandra

Journal:

Expert Opinion on Therapeutic Targets

Year:

2017

Language:

english

File:

PDF, 17.77 MB

english, 2017

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